PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi0183s00260.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bHLH
Protein Properties Length: 327aa    MW: 36224.7 Da    PI: 5.6459
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi0183s00260.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.71e-13102153155
                        CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        +r++h  +Er+RR+++N+ ++ Lr+l+P     + k+ + a+i   +v+YI++Lq
  Vradi0183s00260.1 102 QRMSHITVERNRRKQMNEHLSVLRSLMPCF---YVKRGDQASIIGGVVDYINELQ 153
                        79***************************9...9********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.55E-1499157No hitNo description
SuperFamilySSF474594.19E-18100175IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.434101152IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-13101157IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.5E-11102153IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.7E-11107158IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010374Biological Processstomatal complex development
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MDDNLCDIFD DKEFGSDHFG GDDLFAILES LESDFTHFPP INEEAVAVSK DNEDVSRLVS  60
QKSTSSSAPQ DYSETEFETS SKTKRQKLTP TTPEEANPDG QQRMSHITVE RNRRKQMNEH  120
LSVLRSLMPC FYVKRGDQAS IIGGVVDYIN ELQQVLQALE AKKQRKVYSE VLSPRLVSSP  180
RPSPLSPRKP PLSPRLNLPI SPRTPQPGSP YRPRLQQGYN NMISPTISNS LDPSPTSSAN  240
SSINDNINEL VANSKSATAD VEVKFSGPHV LLKTVSQRIP GQALKIITAL EDLALEILHV  300
NINCAADDTM LNSFTIKVHF ELEHKS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1102113RMSHITVERNRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150350.0AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014522371.10.0PREDICTED: transcription factor SPEECHLESS
SwissprotQ700C75e-94SPCH_ARATH; Transcription factor SPEECHLESS
TrEMBLA0A0L9UFD10.0A0A0L9UFD1_PHAAN; Uncharacterized protein
STRINGGLYMA04G41710.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF36863463
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53210.16e-51bHLH family protein